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CUAIFile Class Reference

Detailed Description

Class UAIFILE used to read data from UAI files. See http://graphmod.ics.uci.edu/uai08/FileFormat for more details.

Definition at line 27 of file UAIFile.h.

Inheritance diagram for CUAIFile:
[legend]

Public Member Functions

 CUAIFile ()
 
 CUAIFile (FILE *f, const char *name=NULL)
 
 CUAIFile (const char *fname, char rw='r', const char *name=NULL)
 
virtual ~CUAIFile ()
 
virtual const char * get_name () const
 
void close ()
 
FILE * get_file_descriptor ()
 
void set_variable_name (const char *name)
 
char * get_variable_name ()
 
virtual CSGObjectshallow_copy () const
 
virtual CSGObjectdeep_copy () const
 
virtual bool is_generic (EPrimitiveType *generic) const
 
template<class T >
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
template<>
void set_generic ()
 
void unset_generic ()
 
virtual void print_serializable (const char *prefix="")
 
virtual bool save_serializable (CSerializableFile *file, const char *prefix="")
 
virtual bool load_serializable (CSerializableFile *file, const char *prefix="")
 
void set_global_io (SGIO *io)
 
SGIOget_global_io ()
 
void set_global_parallel (Parallel *parallel)
 
Parallelget_global_parallel ()
 
void set_global_version (Version *version)
 
Versionget_global_version ()
 
SGStringList< char > get_modelsel_names ()
 
void print_modsel_params ()
 
char * get_modsel_param_descr (const char *param_name)
 
index_t get_modsel_param_index (const char *param_name)
 
void build_gradient_parameter_dictionary (CMap< TParameter *, CSGObject * > *dict)
 
bool has (const std::string &name) const
 
template<typename T >
bool has (const Tag< T > &tag) const
 
template<typename T , typename U = void>
bool has (const std::string &name) const
 
template<typename T >
void set (const Tag< T > &_tag, const T &value)
 
template<typename T , typename U = void>
void set (const std::string &name, const T &value)
 
template<typename T >
get (const Tag< T > &_tag) const
 
template<typename T , typename U = void>
get (const std::string &name) const
 
virtual void update_parameter_hash ()
 
virtual bool parameter_hash_changed ()
 
virtual bool equals (CSGObject *other, float64_t accuracy=0.0, bool tolerant=false)
 
virtual CSGObjectclone ()
 
Parse Function

Function to parse a given UAI file

virtual void parse ()
 
Network Type Access Function

Function to set the network type

Parameters
net_typetype of network model (either MARKOV or BAYES)
virtual void set_net_type (const char *net_type)
 
virtual void set_num_vars (int32_t num_vars)
 
virtual void set_num_factors (int32_t num_vars)
 
virtual void set_vars_card (SGVector< int32_t > vars_card)
 
virtual void set_factors_scope (int32_t num_factors, const SGVector< int32_t > *factors_scope)
 
virtual void set_factors_table (int32_t num_factors, const SGVector< float64_t > *factors_table)
 
virtual void get_preamble (SGVector< char > &net_type, int32_t &num_vars, SGVector< int32_t > &vars_card, int32_t &num_factors, SGVector< int32_t > *&factors_scope)
 
virtual void get_factors_table (SGVector< float64_t > *&factors_table)
 
Vector Access Functions

vector access functions

Functions to access vectors of one of the several base data types. These functions are used when writing vectors of length len to e.g. a file

virtual void get_vector (int8_t *&vector, int32_t &len)
 
virtual void get_vector (uint8_t *&vector, int32_t &len)
 
virtual void get_vector (char *&vector, int32_t &len)
 
virtual void get_vector (int32_t *&vector, int32_t &len)
 
virtual void get_vector (uint32_t *&vector, int32_t &len)
 
virtual void get_vector (float64_t *&vector, int32_t &len)
 
virtual void get_vector (float32_t *&vector, int32_t &len)
 
virtual void get_vector (floatmax_t *&vector, int32_t &len)
 
virtual void get_vector (int16_t *&vector, int32_t &len)
 
virtual void get_vector (uint16_t *&vector, int32_t &len)
 
virtual void get_vector (int64_t *&vector, int32_t &len)
 
virtual void get_vector (uint64_t *&vector, int32_t &len)
 
virtual void set_vector (const int8_t *vector, int32_t len)
 
virtual void set_vector (const uint8_t *vector, int32_t len)
 
virtual void set_vector (const char *vector, int32_t len)
 
virtual void set_vector (const int32_t *vector, int32_t len)
 
virtual void set_vector (const uint32_t *vector, int32_t len)
 
virtual void set_vector (const float32_t *vector, int32_t len)
 
virtual void set_vector (const float64_t *vector, int32_t len)
 
virtual void set_vector (const floatmax_t *vector, int32_t len)
 
virtual void set_vector (const int16_t *vector, int32_t len)
 
virtual void set_vector (const uint16_t *vector, int32_t len)
 
virtual void set_vector (const int64_t *vector, int32_t len)
 
virtual void set_vector (const uint64_t *vector, int32_t len)
 
Vector Access Functions

vector access functions

Functions to access vectors of one of the several base data types. These functions are used when writing vectors of length len to e.g. a file

virtual void get_vector (bool *&vector, int32_t &len)
 
virtual void set_vector (const bool *vector, int32_t len)
 
Matrix Access Functions

Functions to access matrices of one of the several base data types. These functions are used when writing matrices of num_feat rows and num_vec columns to e.g. a file

virtual void get_matrix (bool *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (uint8_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (int8_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (char *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (int32_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (uint32_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (int64_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (uint64_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (float32_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (float64_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (floatmax_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (int16_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_matrix (uint16_t *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void set_matrix (const bool *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const uint8_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const int8_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const char *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const int32_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const uint32_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const int64_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const uint64_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const float32_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const float64_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const floatmax_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const int16_t *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_matrix (const uint16_t *matrix, int32_t num_feat, int32_t num_vec)
 
N-Dimensional Array Access Functions

nd-array access functions

Functions to access n-dimensional arrays of one of the several base data types. These functions are used when loading n-dimensional arrays from e.g. file and return the them and its dimensions dims and num_dims by reference

virtual void get_ndarray (uint8_t *&array, int32_t *&dims, int32_t &num_dims)
 
virtual void get_ndarray (char *&array, int32_t *&dims, int32_t &num_dims)
 
virtual void get_ndarray (int32_t *&array, int32_t *&dims, int32_t &num_dims)
 
virtual void get_ndarray (float32_t *&array, int32_t *&dims, int32_t &num_dims)
 
virtual void get_ndarray (float64_t *&array, int32_t *&dims, int32_t &num_dims)
 
virtual void get_ndarray (int16_t *&array, int32_t *&dims, int32_t &num_dims)
 
virtual void get_ndarray (uint16_t *&array, int32_t *&dims, int32_t &num_dims)
 
Sparse Vector Access Functions

Functions to access sparse vectors of one of the several base data types. These functions are used when writing sparse vectors of num_feat entries to e.g. a file

virtual void get_sparse_vector (SGSparseVectorEntry< bool > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< uint8_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< int8_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< char > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< int32_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< uint32_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< int64_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< uint64_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< int16_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< uint16_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< float32_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< float64_t > *&entries, int32_t &num_feat)
 
virtual void get_sparse_vector (SGSparseVectorEntry< floatmax_t > *&entries, int32_t &num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< bool > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< uint8_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< int8_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< char > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< int32_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< uint32_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< int64_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< uint64_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< int16_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< uint16_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< float32_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< float64_t > *entries, int32_t num_feat)
 
virtual void set_sparse_vector (const SGSparseVectorEntry< floatmax_t > *entries, int32_t num_feat)
 
Sparse Matrix Access Functions

Functions to access sparse matrices of one of the several base data types. These functions are used when writing sparse matrices of num_feat rows and num_vec columns to e.g. a file

virtual void get_sparse_matrix (SGSparseVector< bool > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< uint8_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< int8_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< char > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< int32_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< uint32_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< int64_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< uint64_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< int16_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< uint16_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< float32_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< float64_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void get_sparse_matrix (SGSparseVector< floatmax_t > *&matrix, int32_t &num_feat, int32_t &num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< bool > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< uint8_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< int8_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< char > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< int32_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< uint32_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< int64_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< uint64_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< int16_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< uint16_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< float32_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< float64_t > *matrix, int32_t num_feat, int32_t num_vec)
 
virtual void set_sparse_matrix (const SGSparseVector< floatmax_t > *matrix, int32_t num_feat, int32_t num_vec)
 
String Access Functions

Functions to access strings of one of the several base data types. These functions are used when writing variable length datatypes like strings to a file. Here num_str denotes the number of strings and strings is a pointer to a string structure.

virtual void get_string_list (SGString< bool > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< uint8_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< int8_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< char > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< int32_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< uint32_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< int16_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< uint16_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< int64_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< uint64_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< float32_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< float64_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void get_string_list (SGString< floatmax_t > *&strings, int32_t &num_str, int32_t &max_string_len)
 
virtual void set_string_list (const SGString< bool > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< uint8_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< int8_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< char > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< int32_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< uint32_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< int16_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< uint16_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< int64_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< uint64_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< float32_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< float64_t > *strings, int32_t num_str)
 
virtual void set_string_list (const SGString< floatmax_t > *strings, int32_t num_str)
 

Static Public Member Functions

static char * read_whole_file (char *fname, size_t &len)
 

Public Attributes

SGIOio
 
Parallelparallel
 
Versionversion
 
Parameterm_parameters
 
Parameterm_model_selection_parameters
 
Parameterm_gradient_parameters
 
uint32_t m_hash
 

Protected Member Functions

virtual void load_serializable_pre () throw (ShogunException)
 
virtual void load_serializable_post () throw (ShogunException)
 
virtual void save_serializable_pre () throw (ShogunException)
 
virtual void save_serializable_post () throw (ShogunException)
 
template<typename T >
void register_param (Tag< T > &_tag, const T &value)
 
template<typename T >
void register_param (const std::string &name, const T &value)
 

Protected Attributes

CLineReaderm_line_reader
 
CParserm_parser
 
CDelimiterTokenizerm_line_tokenizer
 
CDelimiterTokenizerm_tokenizer
 
char m_delimiter
 
int32_t m_num_vars
 
int32_t m_num_factors
 
SGVector< char > m_net_type
 
SGVector< int32_t > m_vars_card
 
SGVector< int32_t > * m_factors_scope
 
SGVector< float64_t > * m_factors_table
 
FILE * file
 
char task
 
char * filename
 
char * variable_name
 

Constructor & Destructor Documentation

CUAIFile ( )

default constructor

Definition at line 17 of file UAIFile.cpp.

CUAIFile ( FILE *  f,
const char *  name = NULL 
)

constructor

Parameters
falready opened file
namevariable name (e.g. "x" or "/path/to/x")

Definition at line 22 of file UAIFile.cpp.

CUAIFile ( const char *  fname,
char  rw = 'r',
const char *  name = NULL 
)

constructor

Parameters
fnamefilename to open
rwmode, 'r' or 'w'
namevariable name (e.g. "x" or "/path/to/x")

Definition at line 38 of file UAIFile.cpp.

~CUAIFile ( )
virtual

destructor

Definition at line 45 of file UAIFile.cpp.

Member Function Documentation

void build_gradient_parameter_dictionary ( CMap< TParameter *, CSGObject * > *  dict)
inherited

Builds a dictionary of all parameters in SGObject as well of those of SGObjects that are parameters of this object. Dictionary maps parameters to the objects that own them.

Parameters
dictdictionary of parameters to be built.

Definition at line 630 of file SGObject.cpp.

CSGObject * clone ( )
virtualinherited

Creates a clone of the current object. This is done via recursively traversing all parameters, which corresponds to a deep copy. Calling equals on the cloned object always returns true although none of the memory of both objects overlaps.

Returns
an identical copy of the given object, which is disjoint in memory. NULL if the clone fails. Note that the returned object is SG_REF'ed

Definition at line 747 of file SGObject.cpp.

void close ( )
inherited

close

Definition at line 69 of file File.h.

CSGObject * deep_copy ( ) const
virtualinherited

A deep copy. All the instance variables will also be copied.

Definition at line 231 of file SGObject.cpp.

bool equals ( CSGObject other,
float64_t  accuracy = 0.0,
bool  tolerant = false 
)
virtualinherited

Recursively compares the current SGObject to another one. Compares all registered numerical parameters, recursion upon complex (SGObject) parameters. Does not compare pointers!

May be overwritten but please do with care! Should not be necessary in most cases.

Parameters
otherobject to compare with
accuracyaccuracy to use for comparison (optional)
tolerantallows linient check on float equality (within accuracy)
Returns
true if all parameters were equal, false if not

Definition at line 651 of file SGObject.cpp.

T get ( const Tag< T > &  _tag) const
inherited

Getter for a class parameter, identified by a Tag. Throws an exception if the class does not have such a parameter.

Parameters
_tagname and type information of parameter
Returns
value of the parameter identified by the input tag

Definition at line 367 of file SGObject.h.

T get ( const std::string &  name) const
inherited

Getter for a class parameter, identified by a name. Throws an exception if the class does not have such a parameter.

Parameters
namename of the parameter
Returns
value of the parameter corresponding to the input name and type

Definition at line 388 of file SGObject.h.

void get_factors_table ( SGVector< float64_t > *&  factors_table)
virtual

Function to access factor table

Parameters
factors_tabletable of all the factors

Definition at line 308 of file UAIFile.cpp.

FILE* get_file_descriptor ( )
inherited

get the file descriptor

Returns
FILE ptr

Definition at line 85 of file File.h.

SGIO * get_global_io ( )
inherited

get the io object

Returns
io object

Definition at line 268 of file SGObject.cpp.

Parallel * get_global_parallel ( )
inherited

get the parallel object

Returns
parallel object

Definition at line 310 of file SGObject.cpp.

Version * get_global_version ( )
inherited

get the version object

Returns
version object

Definition at line 323 of file SGObject.cpp.

void get_matrix ( bool *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Definition at line 109 of file File.cpp.

virtual void get_matrix ( uint8_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 148 of file File.h.

virtual void get_matrix ( int8_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 150 of file File.h.

virtual void get_matrix ( char *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 152 of file File.h.

virtual void get_matrix ( int32_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 154 of file File.h.

virtual void get_matrix ( uint32_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 156 of file File.h.

virtual void get_matrix ( int64_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 158 of file File.h.

virtual void get_matrix ( uint64_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 160 of file File.h.

virtual void get_matrix ( float32_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 162 of file File.h.

virtual void get_matrix ( float64_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 164 of file File.h.

virtual void get_matrix ( floatmax_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 166 of file File.h.

virtual void get_matrix ( int16_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 168 of file File.h.

virtual void get_matrix ( uint16_t *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 170 of file File.h.

SGStringList< char > get_modelsel_names ( )
inherited
Returns
vector of names of all parameters which are registered for model selection

Definition at line 531 of file SGObject.cpp.

char * get_modsel_param_descr ( const char *  param_name)
inherited

Returns description of a given parameter string, if it exists. SG_ERROR otherwise

Parameters
param_namename of the parameter
Returns
description of the parameter

Definition at line 555 of file SGObject.cpp.

index_t get_modsel_param_index ( const char *  param_name)
inherited

Returns index of model selection parameter with provided index

Parameters
param_namename of model selection parameter
Returns
index of model selection parameter with provided name, -1 if there is no such

Definition at line 568 of file SGObject.cpp.

virtual const char* get_name ( ) const
virtual
Returns
object name

Reimplemented from CFile.

Definition at line 176 of file UAIFile.h.

virtual void get_ndarray ( uint8_t *&  array,
int32_t *&  dims,
int32_t &  num_dims 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 186 of file File.h.

virtual void get_ndarray ( char *&  array,
int32_t *&  dims,
int32_t &  num_dims 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 188 of file File.h.

virtual void get_ndarray ( int32_t *&  array,
int32_t *&  dims,
int32_t &  num_dims 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 190 of file File.h.

virtual void get_ndarray ( float32_t *&  array,
int32_t *&  dims,
int32_t &  num_dims 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 192 of file File.h.

virtual void get_ndarray ( float64_t *&  array,
int32_t *&  dims,
int32_t &  num_dims 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 194 of file File.h.

virtual void get_ndarray ( int16_t *&  array,
int32_t *&  dims,
int32_t &  num_dims 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 196 of file File.h.

virtual void get_ndarray ( uint16_t *&  array,
int32_t *&  dims,
int32_t &  num_dims 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 198 of file File.h.

void get_preamble ( SGVector< char > &  net_type,
int32_t &  num_vars,
SGVector< int32_t > &  vars_card,
int32_t &  num_factors,
SGVector< int32_t > *&  factors_scope 
)
virtual

Function to access preamble

Parameters
net_typetype of network
num_varsnumber of variables
vars_cardcardinality of variables
num_factorsnumber of factors
factors_scopescope of all the factors

Definition at line 292 of file UAIFile.cpp.

virtual void get_sparse_matrix ( SGSparseVector< bool > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 245 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< uint8_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 247 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< int8_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 249 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< char > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 251 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< int32_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 253 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< uint32_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 255 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< int64_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 257 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< uint64_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 259 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< int16_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 261 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< uint16_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 263 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< float32_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 265 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< float64_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 267 of file File.h.

virtual void get_sparse_matrix ( SGSparseVector< floatmax_t > *&  matrix,
int32_t &  num_feat,
int32_t &  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 269 of file File.h.

virtual void get_sparse_vector ( SGSparseVectorEntry< bool > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< uint8_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< int8_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< char > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< int32_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< uint32_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< int64_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< uint64_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< int16_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< uint16_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< float32_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< float64_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
virtual void get_sparse_vector ( SGSparseVectorEntry< floatmax_t > *&  entries,
int32_t &  num_feat 
)
virtualinherited
void get_string_list ( SGString< bool > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Definition at line 140 of file File.cpp.

virtual void get_string_list ( SGString< uint8_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 285 of file File.h.

virtual void get_string_list ( SGString< int8_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 288 of file File.h.

virtual void get_string_list ( SGString< char > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 291 of file File.h.

virtual void get_string_list ( SGString< int32_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 294 of file File.h.

virtual void get_string_list ( SGString< uint32_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 297 of file File.h.

virtual void get_string_list ( SGString< int16_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 300 of file File.h.

virtual void get_string_list ( SGString< uint16_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 303 of file File.h.

virtual void get_string_list ( SGString< int64_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 306 of file File.h.

virtual void get_string_list ( SGString< uint64_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 309 of file File.h.

virtual void get_string_list ( SGString< float32_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 312 of file File.h.

virtual void get_string_list ( SGString< float64_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 315 of file File.h.

virtual void get_string_list ( SGString< floatmax_t > *&  strings,
int32_t &  num_str,
int32_t &  max_string_len 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 318 of file File.h.

char * get_variable_name ( )
inherited

get the path to the variable to be accessed

only supported by some file interfaces like CHDF5File

Returns
name variable path & name

Definition at line 193 of file File.cpp.

void get_vector ( bool *&  vector,
int32_t &  len 
)
virtualinherited

Definition at line 81 of file File.cpp.

virtual void get_vector ( int8_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( uint8_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( char *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( int32_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( uint32_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( float64_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( float32_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( floatmax_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( int16_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( uint16_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( int64_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

virtual void get_vector ( uint64_t *&  vector,
int32_t &  len 
)
virtual

Reimplemented from CFile.

bool has ( const std::string &  name) const
inherited

Checks if object has a class parameter identified by a name.

Parameters
namename of the parameter
Returns
true if the parameter exists with the input name

Definition at line 289 of file SGObject.h.

bool has ( const Tag< T > &  tag) const
inherited

Checks if object has a class parameter identified by a Tag.

Parameters
tagtag of the parameter containing name and type information
Returns
true if the parameter exists with the input tag

Definition at line 301 of file SGObject.h.

bool has ( const std::string &  name) const
inherited

Checks if a type exists for a class parameter identified by a name.

Parameters
namename of the parameter
Returns
true if the parameter exists with the input name and type

Definition at line 312 of file SGObject.h.

bool is_generic ( EPrimitiveType *  generic) const
virtualinherited

If the SGSerializable is a class template then TRUE will be returned and GENERIC is set to the type of the generic.

Parameters
genericset to the type of the generic if returning TRUE
Returns
TRUE if a class template.

Definition at line 329 of file SGObject.cpp.

bool load_serializable ( CSerializableFile file,
const char *  prefix = "" 
)
virtualinherited

Load this object from file. If it will fail (returning FALSE) then this object will contain inconsistent data and should not be used!

Parameters
filewhere to load from
prefixprefix for members
Returns
TRUE if done, otherwise FALSE

Definition at line 402 of file SGObject.cpp.

void load_serializable_post ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_POST is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CKernel, CWeightedDegreePositionStringKernel, CList, CAlphabet, CLinearHMM, CGaussianKernel, CInverseMultiQuadricKernel, CCircularKernel, and CExponentialKernel.

Definition at line 459 of file SGObject.cpp.

void load_serializable_pre ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::LOAD_SERIALIZABLE_PRE is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool >, and CDynamicObjectArray.

Definition at line 454 of file SGObject.cpp.

bool parameter_hash_changed ( )
virtualinherited
Returns
whether parameter combination has changed since last update

Definition at line 295 of file SGObject.cpp.

void parse ( )
virtual

Definition at line 173 of file UAIFile.cpp.

void print_modsel_params ( )
inherited

prints all parameter registered for model selection and their type

Definition at line 507 of file SGObject.cpp.

void print_serializable ( const char *  prefix = "")
virtualinherited

prints registered parameters out

Parameters
prefixprefix for members

Definition at line 341 of file SGObject.cpp.

char * read_whole_file ( char *  fname,
size_t &  len 
)
staticinherited

read whole file in memory

Parameters
fname- file name
len- length of file (returned by reference)
Returns
buffer to read file - needs to be freed with SG_FREE

Definition at line 234 of file File.cpp.

void register_param ( Tag< T > &  _tag,
const T &  value 
)
protectedinherited

Registers a class parameter which is identified by a tag. This enables the parameter to be modified by set() and retrieved by get(). Parameters can be registered in the constructor of the class.

Parameters
_tagname and type information of parameter
valuevalue of the parameter

Definition at line 439 of file SGObject.h.

void register_param ( const std::string &  name,
const T &  value 
)
protectedinherited

Registers a class parameter which is identified by a name. This enables the parameter to be modified by set() and retrieved by get(). Parameters can be registered in the constructor of the class.

Parameters
namename of the parameter
valuevalue of the parameter along with type information

Definition at line 452 of file SGObject.h.

bool save_serializable ( CSerializableFile file,
const char *  prefix = "" 
)
virtualinherited

Save this object to file.

Parameters
filewhere to save the object; will be closed during returning if PREFIX is an empty string.
prefixprefix for members
Returns
TRUE if done, otherwise FALSE

Definition at line 347 of file SGObject.cpp.

void save_serializable_post ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to post-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_POST is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CKernel.

Definition at line 469 of file SGObject.cpp.

void save_serializable_pre ( )
throw (ShogunException
)
protectedvirtualinherited

Can (optionally) be overridden to pre-initialize some member variables which are not PARAMETER::ADD'ed. Make sure that at first the overridden method BASE_CLASS::SAVE_SERIALIZABLE_PRE is called.

Exceptions
ShogunExceptionwill be thrown if an error occurs.

Reimplemented in CKernel, CDynamicArray< T >, CDynamicArray< float64_t >, CDynamicArray< float32_t >, CDynamicArray< int32_t >, CDynamicArray< char >, CDynamicArray< bool >, and CDynamicObjectArray.

Definition at line 464 of file SGObject.cpp.

void set ( const Tag< T > &  _tag,
const T &  value 
)
inherited

Setter for a class parameter, identified by a Tag. Throws an exception if the class does not have such a parameter.

Parameters
_tagname and type information of parameter
valuevalue of the parameter

Definition at line 328 of file SGObject.h.

void set ( const std::string &  name,
const T &  value 
)
inherited

Setter for a class parameter, identified by a name. Throws an exception if the class does not have such a parameter.

Parameters
namename of the parameter
valuevalue of the parameter along with type information

Definition at line 354 of file SGObject.h.

void set_factors_scope ( int32_t  num_factors,
const SGVector< int32_t > *  factors_scope 
)
virtual

Function to set the scope of factors

Parameters
num_factorsnumber of factors
factors_scopelist of factors scope (SGVector<int32_t>)

Definition at line 257 of file UAIFile.cpp.

void set_factors_table ( int32_t  num_factors,
const SGVector< float64_t > *  factors_table 
)
virtual

Function to set the table of factors

Parameters
num_factorsnumber of factors
factors_tablelist of factors table (SGVector<float64_t>)

Definition at line 275 of file UAIFile.cpp.

void set_generic ( )
inherited

Definition at line 74 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 79 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 84 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 89 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 94 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 99 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 104 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 109 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 114 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 119 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 124 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 129 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 134 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 139 of file SGObject.cpp.

void set_generic ( )
inherited

Definition at line 144 of file SGObject.cpp.

void set_generic ( )
inherited

set generic type to T

void set_global_io ( SGIO io)
inherited

set the io object

Parameters
ioio object to use

Definition at line 261 of file SGObject.cpp.

void set_global_parallel ( Parallel parallel)
inherited

set the parallel object

Parameters
parallelparallel object to use

Definition at line 274 of file SGObject.cpp.

void set_global_version ( Version version)
inherited

set the version object

Parameters
versionversion object to use

Definition at line 316 of file SGObject.cpp.

void set_matrix ( const bool *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Definition at line 126 of file File.cpp.

virtual void set_matrix ( const uint8_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 358 of file File.h.

virtual void set_matrix ( const int8_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 360 of file File.h.

virtual void set_matrix ( const char *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 362 of file File.h.

virtual void set_matrix ( const int32_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 364 of file File.h.

virtual void set_matrix ( const uint32_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 366 of file File.h.

virtual void set_matrix ( const int64_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 368 of file File.h.

virtual void set_matrix ( const uint64_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 370 of file File.h.

virtual void set_matrix ( const float32_t matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 372 of file File.h.

virtual void set_matrix ( const float64_t matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 374 of file File.h.

virtual void set_matrix ( const floatmax_t matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 376 of file File.h.

virtual void set_matrix ( const int16_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 378 of file File.h.

virtual void set_matrix ( const uint16_t *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, and CBinaryFile.

Definition at line 380 of file File.h.

void set_net_type ( const char *  net_type)
virtual

Definition at line 223 of file UAIFile.cpp.

void set_num_factors ( int32_t  num_vars)
virtual

Function to set number of factors

Parameters
num_varsnumber of factors

Definition at line 251 of file UAIFile.cpp.

void set_num_vars ( int32_t  num_vars)
virtual

Function to set number of variables

Parameters
num_varsnumber of variables

Definition at line 235 of file UAIFile.cpp.

virtual void set_sparse_matrix ( const SGSparseVector< bool > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 426 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< uint8_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 428 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< int8_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 430 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< char > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 432 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< int32_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 434 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< uint32_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 436 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< int64_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 438 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< uint64_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 440 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< int16_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 442 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< uint16_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 444 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< float32_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 446 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< float64_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 448 of file File.h.

virtual void set_sparse_matrix ( const SGSparseVector< floatmax_t > *  matrix,
int32_t  num_feat,
int32_t  num_vec 
)
virtualinherited

Reimplemented in CCSVFile, CProtobufFile, CBinaryFile, and CLibSVMFile.

Definition at line 450 of file File.h.

virtual void set_sparse_vector ( const SGSparseVectorEntry< bool > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< uint8_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< int8_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< char > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< int32_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< uint32_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< int64_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< uint64_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< int16_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< uint16_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< float32_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< float64_t > *  entries,
int32_t  num_feat 
)
virtualinherited
virtual void set_sparse_vector ( const SGSparseVectorEntry< floatmax_t > *  entries,
int32_t  num_feat 
)
virtualinherited
void set_string_list ( const SGString< bool > *  strings,
int32_t  num_str 
)
virtualinherited

Definition at line 163 of file File.cpp.

virtual void set_string_list ( const SGString< uint8_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 465 of file File.h.

virtual void set_string_list ( const SGString< int8_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 467 of file File.h.

virtual void set_string_list ( const SGString< char > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 469 of file File.h.

virtual void set_string_list ( const SGString< int32_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 471 of file File.h.

virtual void set_string_list ( const SGString< uint32_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 473 of file File.h.

virtual void set_string_list ( const SGString< int16_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 475 of file File.h.

virtual void set_string_list ( const SGString< uint16_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 477 of file File.h.

virtual void set_string_list ( const SGString< int64_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 479 of file File.h.

virtual void set_string_list ( const SGString< uint64_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 481 of file File.h.

virtual void set_string_list ( const SGString< float32_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 483 of file File.h.

virtual void set_string_list ( const SGString< float64_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 485 of file File.h.

virtual void set_string_list ( const SGString< floatmax_t > *  strings,
int32_t  num_str 
)
virtualinherited

Reimplemented in CCSVFile, CBinaryFile, and CProtobufFile.

Definition at line 487 of file File.h.

void set_variable_name ( const char *  name)
inherited

set the path to the variable to be accessed

only supported by some file interfaces like CHDF5File

Parameters
namevariable path & name

Definition at line 187 of file File.cpp.

void set_vars_card ( SGVector< int32_t >  vars_card)
virtual

Function to set the cardinality of varibles

Parameters
vars_cardvector of cardinality of variables

Definition at line 241 of file UAIFile.cpp.

virtual void set_vector ( const int8_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const uint8_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const char *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const int32_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const uint32_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const float32_t vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const float64_t vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const floatmax_t vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const int16_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const uint16_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const int64_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

virtual void set_vector ( const uint64_t *  vector,
int32_t  len 
)
virtual

Reimplemented from CFile.

void set_vector ( const bool *  vector,
int32_t  len 
)
virtualinherited

Definition at line 95 of file File.cpp.

CSGObject * shallow_copy ( ) const
virtualinherited

A shallow copy. All the SGObject instance variables will be simply assigned and SG_REF-ed.

Reimplemented in CGaussianKernel.

Definition at line 225 of file SGObject.cpp.

void unset_generic ( )
inherited

unset generic type

this has to be called in classes specializing a template class

Definition at line 336 of file SGObject.cpp.

void update_parameter_hash ( )
virtualinherited

Updates the hash of current parameter combination

Definition at line 281 of file SGObject.cpp.

Member Data Documentation

FILE* file
protectedinherited

file object

Definition at line 505 of file File.h.

char* filename
protectedinherited

name of the handled file

Definition at line 509 of file File.h.

SGIO* io
inherited

io

Definition at line 537 of file SGObject.h.

char m_delimiter
protected

delimiter

Definition at line 199 of file UAIFile.h.

SGVector<int32_t>* m_factors_scope
protected

scope of all the factors

Definition at line 214 of file UAIFile.h.

SGVector<float64_t>* m_factors_table
protected

data of all the factors

Definition at line 217 of file UAIFile.h.

Parameter* m_gradient_parameters
inherited

parameters wrt which we can compute gradients

Definition at line 552 of file SGObject.h.

uint32_t m_hash
inherited

Hash of parameter values

Definition at line 555 of file SGObject.h.

CLineReader* m_line_reader
protected

object for reading lines from file

Definition at line 187 of file UAIFile.h.

CDelimiterTokenizer* m_line_tokenizer
protected

tokenizer for line_reader

Definition at line 193 of file UAIFile.h.

Parameter* m_model_selection_parameters
inherited

model selection parameters

Definition at line 549 of file SGObject.h.

SGVector<char> m_net_type
protected

type of network (either "MARKOV" or "BAYES")

Definition at line 208 of file UAIFile.h.

int32_t m_num_factors
protected

number of factors

Definition at line 205 of file UAIFile.h.

int32_t m_num_vars
protected

number of variables

Definition at line 202 of file UAIFile.h.

Parameter* m_parameters
inherited

parameters

Definition at line 546 of file SGObject.h.

CParser* m_parser
protected

parser of lines

Definition at line 190 of file UAIFile.h.

CDelimiterTokenizer* m_tokenizer
protected

tokenizer for parser

Definition at line 196 of file UAIFile.h.

SGVector<int32_t> m_vars_card
protected

variable cardinality

Definition at line 211 of file UAIFile.h.

Parallel* parallel
inherited

parallel

Definition at line 540 of file SGObject.h.

char task
protectedinherited

task

Definition at line 507 of file File.h.

char* variable_name
protectedinherited

variable name / path to variable

Definition at line 511 of file File.h.

Version* version
inherited

version

Definition at line 543 of file SGObject.h.


The documentation for this class was generated from the following files:

SHOGUN Machine Learning Toolbox - Documentation