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1 /*! \page java_modular_examples Examples for Java Modular Interface
2 
3 This page lists ready to run shogun examples for the Java Modular interface.
4 
5 \li \subpage java_modular_classifier_examples
6 \li \subpage java_modular_clustering_examples
7 \li \subpage java_modular_converter_examples
8 \li \subpage java_modular_distance_examples
9 \li \subpage java_modular_distribution_examples
10 \li \subpage java_modular_evaluation_examples
11 \li \subpage java_modular_features_examples
12 \li \subpage java_modular_kernel_examples
13 \li \subpage java_modular_mkl_examples
14 \li \subpage java_modular_preprocessor_examples
15 \li \subpage java_modular_regression_examples
16 \li \subpage java_modular_serialization_examples
17 \li \subpage java_modular_tests_examples
18 
19 To run the examples issue
20 \verbatim
21 javac -jar path/to/modshogun.jar name_of_example.java
22 java -jar path/to/modshogun.jar name_of_example
23 \endverbatim
24 
25 \section java_modular_classifier_examples Classifier
26 
27 
28 \li <b>examples/documented/java_modular/classifier_averaged_perceptron_modular.java</b>
29 \verbinclude classifier_averaged_perceptron_modular.java
30 
31 \li <b>examples/documented/java_modular/classifier_domainadaptationsvm_modular.java</b>
32 \verbinclude classifier_domainadaptationsvm_modular.java
33 
34 \li <b>examples/documented/java_modular/classifier_gaussiannaivebayes_modular.java</b>
35 \verbinclude classifier_gaussiannaivebayes_modular.java
36 
37 \li <b>examples/documented/java_modular/classifier_gmnpsvm_modular.java</b>
38 \verbinclude classifier_gmnpsvm_modular.java
39 
40 \li <b>examples/documented/java_modular/classifier_gpbtsvm_modular.java</b>
41 \verbinclude classifier_gpbtsvm_modular.java
42 
43 \li <b>examples/documented/java_modular/classifier_knn_modular.java</b>
44 \verbinclude classifier_knn_modular.java
45 
46 \li <b>examples/documented/java_modular/classifier_larank_modular.java</b>
47 \verbinclude classifier_larank_modular.java
48 
49 \li <b>examples/documented/java_modular/classifier_lda_modular.java</b>
50 \verbinclude classifier_lda_modular.java
51 
52 \li <b>examples/documented/java_modular/classifier_liblinear_modular.java</b>
53 \verbinclude classifier_liblinear_modular.java
54 
55 \li <b>examples/documented/java_modular/classifier_libsvm_minimal_modular.java</b>
56 \verbinclude classifier_libsvm_minimal_modular.java
57 
58 \li <b>examples/documented/java_modular/classifier_libsvm_modular.java</b>
59 \verbinclude classifier_libsvm_modular.java
60 
61 \li <b>examples/documented/java_modular/classifier_libsvmoneclass_modular.java</b>
62 \verbinclude classifier_libsvmoneclass_modular.java
63 
64 \li <b>examples/documented/java_modular/classifier_mpdsvm_modular.java</b>
65 \verbinclude classifier_mpdsvm_modular.java
66 
67 \li <b>examples/documented/java_modular/classifier_multiclasslibsvm_modular.java</b>
68 \verbinclude classifier_multiclasslibsvm_modular.java
69 
70 \li <b>examples/documented/java_modular/classifier_perceptron_modular.java</b>
71 \verbinclude classifier_perceptron_modular.java
72 
73 \li <b>examples/documented/java_modular/classifier_svmlight_linear_term_modular.java</b>
74 \verbinclude classifier_svmlight_linear_term_modular.java
75 
76 \li <b>examples/documented/java_modular/classifier_svmlight_modular.java</b>
77 \verbinclude classifier_svmlight_modular.java
78 
79 \section java_modular_clustering_examples Clustering
80 
81 
82 \li <b>examples/documented/java_modular/clustering_hierarchical_modular.java</b>
83 \verbinclude clustering_hierarchical_modular.java
84 
85 \li <b>examples/documented/java_modular/clustering_kmeans_modular.java</b>
86 \verbinclude clustering_kmeans_modular.java
87 
88 \section java_modular_converter_examples Converter
89 
90 
91 \li <b>examples/documented/java_modular/converter_isomap_modular.java</b>
92 \verbinclude converter_isomap_modular.java
93 
94 \li <b>examples/documented/java_modular/converter_locallylinearembedding_modular.py</b>
95 \verbinclude converter_locallylinearembedding_modular.py
96 
97 \li <b>examples/documented/java_modular/converter_multidimensionalscaling_modular.java</b>
98 \verbinclude converter_multidimensionalscaling_modular.java
99 
100 \section java_modular_distance_examples Distance
101 
102 
103 \li <b>examples/documented/java_modular/distance_braycurtis_modular.java</b>
104 \verbinclude distance_braycurtis_modular.java
105 
106 \li <b>examples/documented/java_modular/distance_canberra_modular.java</b>
107 \verbinclude distance_canberra_modular.java
108 
109 \li <b>examples/documented/java_modular/distance_canberraword_modular.java</b>
110 \verbinclude distance_canberraword_modular.java
111 
112 \li <b>examples/documented/java_modular/distance_chebyshew_modular.java</b>
113 \verbinclude distance_chebyshew_modular.java
114 
115 \li <b>examples/documented/java_modular/distance_chisquare_modular.java</b>
116 \verbinclude distance_chisquare_modular.java
117 
118 \li <b>examples/documented/java_modular/distance_cosine_modular.java</b>
119 \verbinclude distance_cosine_modular.java
120 
121 \li <b>examples/documented/java_modular/distance_euclidean_modular.java</b>
122 \verbinclude distance_euclidean_modular.java
123 
124 \li <b>examples/documented/java_modular/distance_geodesic_modular.java</b>
125 \verbinclude distance_geodesic_modular.java
126 
127 \li <b>examples/documented/java_modular/distance_hammingword_modular.java</b>
128 \verbinclude distance_hammingword_modular.java
129 
130 \li <b>examples/documented/java_modular/distance_jensen_modular.java</b>
131 \verbinclude distance_jensen_modular.java
132 
133 \li <b>examples/documented/java_modular/distance_manhatten_modular.java</b>
134 \verbinclude distance_manhatten_modular.java
135 
136 \li <b>examples/documented/java_modular/distance_manhattenword_modular.java</b>
137 \verbinclude distance_manhattenword_modular.java
138 
139 \li <b>examples/documented/java_modular/distance_minkowski_modular.java</b>
140 \verbinclude distance_minkowski_modular.java
141 
142 \li <b>examples/documented/java_modular/distance_normsquared_modular.java</b>
143 \verbinclude distance_normsquared_modular.java
144 
145 \li <b>examples/documented/java_modular/distance_tanimoto_modular.java</b>
146 \verbinclude distance_tanimoto_modular.java
147 
148 \section java_modular_distribution_examples Distribution
149 
150 
151 \li <b>examples/documented/java_modular/distribution_histogram_modular.java</b>
152 \verbinclude distribution_histogram_modular.java
153 
154 \li <b>examples/documented/java_modular/distribution_hmm_modular.java</b>
155 \verbinclude distribution_hmm_modular.java
156 
157 \li <b>examples/documented/java_modular/distribution_linearhmm_modular.java</b>
158 \verbinclude distribution_linearhmm_modular.java
159 
160 \li <b>examples/documented/java_modular/distribution_ppwm_modular.java</b>
161 \verbinclude distribution_ppwm_modular.java
162 
163 \section java_modular_evaluation_examples Evaluation
164 
165 
166 \li <b>examples/documented/java_modular/evaluation_contingencytableevaluation_modular.java</b>
167 \verbinclude evaluation_contingencytableevaluation_modular.java
168 
169 \li <b>examples/documented/java_modular/evaluation_meansquarederror_modular.java</b>
170 \verbinclude evaluation_meansquarederror_modular.java
171 
172 \li <b>examples/documented/java_modular/evaluation_multiclassaccuracy_modular.java</b>
173 \verbinclude evaluation_multiclassaccuracy_modular.java
174 
175 \li <b>examples/documented/java_modular/evaluation_prcevaluation_modular.java</b>
176 \verbinclude evaluation_prcevaluation_modular.java
177 
178 \li <b>examples/documented/java_modular/evaluation_rocevaluation_modular.java</b>
179 \verbinclude evaluation_rocevaluation_modular.java
180 
181 \section java_modular_features_examples Features
182 
183 
184 \li <b>examples/documented/java_modular/features_dense_modular.java</b>
185 \verbinclude features_dense_modular.java
186 
187 \li <b>examples/documented/java_modular/features_snp_modular.java</b>
188 \verbinclude features_snp_modular.java
189 
190 \li <b>examples/documented/java_modular/features_string_char_compressed_modular.java</b>
191 \verbinclude features_string_char_compressed_modular.java
192 
193 \li <b>examples/documented/java_modular/features_string_char_modular.java</b>
194 \verbinclude features_string_char_modular.java
195 
196 \li <b>examples/documented/java_modular/features_string_file_char_modular.java</b>
197 \verbinclude features_string_file_char_modular.java
198 
199 \li <b>examples/documented/java_modular/features_string_file_modular.java</b>
200 \verbinclude features_string_file_modular.java
201 
202 \li <b>examples/documented/java_modular/features_string_hashed_wd_modular.java</b>
203 \verbinclude features_string_hashed_wd_modular.java
204 
205 \li <b>examples/documented/java_modular/features_string_sliding_window_modular.java</b>
206 \verbinclude features_string_sliding_window_modular.java
207 
208 \li <b>examples/documented/java_modular/features_string_ulong_modular.java</b>
209 \verbinclude features_string_ulong_modular.java
210 
211 \li <b>examples/documented/java_modular/features_string_word_modular.java</b>
212 \verbinclude features_string_word_modular.java
213 
214 \section java_modular_kernel_examples Kernel
215 
216 
217 \li <b>examples/documented/java_modular/kernel_anova_modular.java</b>
218 \verbinclude kernel_anova_modular.java
219 
220 \li <b>examples/documented/java_modular/kernel_auc_modular.java</b>
221 \verbinclude kernel_auc_modular.java
222 
223 \li <b>examples/documented/java_modular/kernel_cauchy_modular.java</b>
224 \verbinclude kernel_cauchy_modular.java
225 
226 \li <b>examples/documented/java_modular/kernel_chi2_modular.java</b>
227 \verbinclude kernel_chi2_modular.java
228 
229 \li <b>examples/documented/java_modular/kernel_circular_modular.java</b>
230 \verbinclude kernel_circular_modular.java
231 
232 \li <b>examples/documented/java_modular/kernel_combined_custom_poly_modular.java</b>
233 \verbinclude kernel_combined_custom_poly_modular.java
234 
235 \li <b>examples/documented/java_modular/kernel_combined_modular.java</b>
236 \verbinclude kernel_combined_modular.java
237 
238 \li <b>examples/documented/java_modular/kernel_comm_ulong_string_modular.java</b>
239 \verbinclude kernel_comm_ulong_string_modular.java
240 
241 \li <b>examples/documented/java_modular/kernel_comm_word_string_modular.java</b>
242 \verbinclude kernel_comm_word_string_modular.java
243 
244 \li <b>examples/documented/java_modular/kernel_const_modular.java</b>
245 \verbinclude kernel_const_modular.java
246 
247 \li <b>examples/documented/java_modular/kernel_custom_modular.java</b>
248 \verbinclude kernel_custom_modular.java
249 
250 \li <b>examples/documented/java_modular/kernel_diag_modular.java</b>
251 \verbinclude kernel_diag_modular.java
252 
253 \li <b>examples/documented/java_modular/kernel_distance_modular.java</b>
254 \verbinclude kernel_distance_modular.java
255 
256 \li <b>examples/documented/java_modular/kernel_distantsegments_modular.java</b>
257 \verbinclude kernel_distantsegments_modular.java
258 
259 \li <b>examples/documented/java_modular/kernel_exponential_modular.java</b>
260 \verbinclude kernel_exponential_modular.java
261 
262 \li <b>examples/documented/java_modular/kernel_fisher_modular.java</b>
263 \verbinclude kernel_fisher_modular.java
264 
265 \li <b>examples/documented/java_modular/kernel_fixed_degree_string_modular.java</b>
266 \verbinclude kernel_fixed_degree_string_modular.java
267 
268 \li <b>examples/documented/java_modular/kernel_gaussian_modular.java</b>
269 \verbinclude kernel_gaussian_modular.java
270 
271 \li <b>examples/documented/java_modular/kernel_gaussian_shift_modular.java</b>
272 \verbinclude kernel_gaussian_shift_modular.java
273 
274 \li <b>examples/documented/java_modular/kernel_histogram_word_string_modular.java</b>
275 \verbinclude kernel_histogram_word_string_modular.java
276 
277 \li <b>examples/documented/java_modular/kernel_inversemultiquadric_modular.java</b>
278 \verbinclude kernel_inversemultiquadric_modular.java
279 
280 \li <b>examples/documented/java_modular/kernel_io_modular.java</b>
281 \verbinclude kernel_io_modular.java
282 
283 \li <b>examples/documented/java_modular/kernel_linear_byte_modular.java</b>
284 \verbinclude kernel_linear_byte_modular.java
285 
286 \li <b>examples/documented/java_modular/kernel_linear_modular.java</b>
287 \verbinclude kernel_linear_modular.java
288 
289 \li <b>examples/documented/java_modular/kernel_linear_string_modular.java</b>
290 \verbinclude kernel_linear_string_modular.java
291 
292 \li <b>examples/documented/java_modular/kernel_linear_word_modular.java</b>
293 \verbinclude kernel_linear_word_modular.java
294 
295 \li <b>examples/documented/java_modular/kernel_local_alignment_string_modular.java</b>
296 \verbinclude kernel_local_alignment_string_modular.java
297 
298 \li <b>examples/documented/java_modular/kernel_locality_improved_string_modular.java</b>
299 \verbinclude kernel_locality_improved_string_modular.java
300 
301 \li <b>examples/documented/java_modular/kernel_log_modular.java</b>
302 \verbinclude kernel_log_modular.java
303 
304 \li <b>examples/documented/java_modular/kernel_match_word_string_modular.java</b>
305 \verbinclude kernel_match_word_string_modular.java
306 
307 \li <b>examples/documented/java_modular/kernel_multiquadric_modular.java</b>
308 \verbinclude kernel_multiquadric_modular.java
309 
310 \li <b>examples/documented/java_modular/kernel_oligo_string_modular.java</b>
311 \verbinclude kernel_oligo_string_modular.java
312 
313 \li <b>examples/documented/java_modular/kernel_poly_match_string_modular.java</b>
314 \verbinclude kernel_poly_match_string_modular.java
315 
316 \li <b>examples/documented/java_modular/kernel_poly_match_word_string_modular.java</b>
317 \verbinclude kernel_poly_match_word_string_modular.java
318 
319 \li <b>examples/documented/java_modular/kernel_poly_modular.java</b>
320 \verbinclude kernel_poly_modular.java
321 
322 \li <b>examples/documented/java_modular/kernel_power_modular.java</b>
323 \verbinclude kernel_power_modular.java
324 
325 \li <b>examples/documented/java_modular/kernel_rationalquadratic_modular.java</b>
326 \verbinclude kernel_rationalquadratic_modular.java
327 
328 \li <b>examples/documented/java_modular/kernel_salzberg_word_string_modular.java</b>
329 \verbinclude kernel_salzberg_word_string_modular.java
330 
331 \li <b>examples/documented/java_modular/kernel_sigmoid_modular.java</b>
332 \verbinclude kernel_sigmoid_modular.java
333 
334 \li <b>examples/documented/java_modular/kernel_simple_locality_improved_string_modular.java</b>
335 \verbinclude kernel_simple_locality_improved_string_modular.java
336 
337 \li <b>examples/documented/java_modular/kernel_spherical_modular.java</b>
338 \verbinclude kernel_spherical_modular.java
339 
340 \li <b>examples/documented/java_modular/kernel_spline_modular.java</b>
341 \verbinclude kernel_spline_modular.java
342 
343 \li <b>examples/documented/java_modular/kernel_top_modular.java</b>
344 \verbinclude kernel_top_modular.java
345 
346 \li <b>examples/documented/java_modular/kernel_tstudent_modular.java</b>
347 \verbinclude kernel_tstudent_modular.java
348 
349 \li <b>examples/documented/java_modular/kernel_wave_modular.java</b>
350 \verbinclude kernel_wave_modular.java
351 
352 \li <b>examples/documented/java_modular/kernel_wavelet_modular.java</b>
353 \verbinclude kernel_wavelet_modular.java
354 
355 \li <b>examples/documented/java_modular/kernel_weighted_comm_word_string_modular.java</b>
356 \verbinclude kernel_weighted_comm_word_string_modular.java
357 
358 \li <b>examples/documented/java_modular/kernel_weighted_degree_position_string_modular.java</b>
359 \verbinclude kernel_weighted_degree_position_string_modular.java
360 
361 \li <b>examples/documented/java_modular/kernel_weighted_degree_string_modular.java</b>
362 \verbinclude kernel_weighted_degree_string_modular.java
363 
364 \section java_modular_mkl_examples Mkl
365 
366 
367 \li <b>examples/documented/java_modular/mkl_binclass_modular.java</b>
368 \verbinclude mkl_binclass_modular.java
369 
370 \li <b>examples/documented/java_modular/mkl_multiclass_modular.java</b>
371 \verbinclude mkl_multiclass_modular.java
372 
373 \section java_modular_preprocessor_examples Preprocessor
374 
375 
376 \li <b>examples/documented/java_modular/preprocessor_kernelpca_modular.java</b>
377 \verbinclude preprocessor_kernelpca_modular.java
378 
379 \li <b>examples/documented/java_modular/preprocessor_logplusone_modular.java</b>
380 \verbinclude preprocessor_logplusone_modular.java
381 
382 \li <b>examples/documented/java_modular/preprocessor_normone_modular.java</b>
383 \verbinclude preprocessor_normone_modular.java
384 
385 \li <b>examples/documented/java_modular/preprocessor_pca_modular.java</b>
386 \verbinclude preprocessor_pca_modular.java
387 
388 \li <b>examples/documented/java_modular/preprocessor_prunevarsubmean_modular.java</b>
389 \verbinclude preprocessor_prunevarsubmean_modular.java
390 
391 \li <b>examples/documented/java_modular/preprocessor_randomfouriergausspreproc_modular.java</b>
392 \verbinclude preprocessor_randomfouriergausspreproc_modular.java
393 
394 \li <b>examples/documented/java_modular/preprocessor_sortulongstring_modular.java</b>
395 \verbinclude preprocessor_sortulongstring_modular.java
396 
397 \li <b>examples/documented/java_modular/preprocessor_sortwordstring_modular.java</b>
398 \verbinclude preprocessor_sortwordstring_modular.java
399 
400 \section java_modular_regression_examples Regression
401 
402 
403 \li <b>examples/documented/java_modular/regression_krr_modular.java</b>
404 \verbinclude regression_krr_modular.java
405 
406 \li <b>examples/documented/java_modular/regression_libsvr_modular.java</b>
407 \verbinclude regression_libsvr_modular.java
408 
409 \li <b>examples/documented/java_modular/regression_svrlight_modular.java</b>
410 \verbinclude regression_svrlight_modular.java
411 
412 \section java_modular_serialization_examples Serialization
413 
414 
415 \li <b>examples/documented/java_modular/serialization_complex_example.java</b>
416 \verbinclude serialization_complex_example.java
417 
418 \li <b>examples/documented/java_modular/serialization_svmlight_modular.java</b>
419 \verbinclude serialization_svmlight_modular.java
420 
421 \section java_modular_tests_examples Tests
422 
423 
424 \li <b>examples/documented/java_modular/tests_check_commwordkernel_memleak_modular.java</b>
425 \verbinclude tests_check_commwordkernel_memleak_modular.java
426 */

SHOGUN Machine Learning Toolbox - Documentation