Open in new window / Try shogun cloud
--- Log opened Sat Mar 09 00:00:05 2013
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shogun-buildbotbuild #316 of nightly_default is complete: Success [build successful]  Build details are at http://www.shogun-toolbox.org/buildbot/builders/nightly_default/builds/31604:37
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lambdayhello.. I am trying to implement a string kernel... how do I do some testing? I mean, I want to see what type of return values I get when I write get_feature_vector inside the "compute" function...12:47
lambdayI tried writing a small main function but getting some linking error12:47
lambday-lshogun is needed?12:49
blackburnlambday: sure12:50
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lambdayblackburn: thanks..but when I'm using the new kernel, I'm getting a ld error... while using other kernels doesn't give that error...12:56
blackburnlambday: you probably forgot to implement some method then (just guess)12:56
lambdayblackburn: umm... the error is "temp.cpp:(.text+0x35): undefined reference to `shogun::CSSKStringKernel::CSSKStringKernel()"12:57
blackburnlambday: no constructor implementation around then :)12:58
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lambdayblackburn: but I did :( I'm checking again12:59
blackburnlambday: paste .cpp somewhere and I'll check13:13
lambdayblackburn: this is SSKStringKernel.h [http://pastebin.com/MiUdEFeY] and this is SSKStringKernel.cpp [http://pastebin.com/Rhb4rHxe]... I am using SNPStringKernel file to modify.. compute method is incomplete but it should work13:21
blackburnlambday: I see nothing wrong so far13:23
lambdayto be sure, all I have to do is to add the .h and .cpp file in the kernel/string dir and run a make, right?13:23
lambdayi see the obj file is there in kernel/string13:23
blackburnlambday: yes13:24
blackburnlambday: they won't be available in modular interface if you don't add them to interfaces/modular/Kernel.i13:24
blackburnand Kernel_includes.i in the same dir13:24
blackburnbut linking error is different13:25
lambdayoh...13:25
lambdaybut I am just using this simple cpp file to test [http://pastebin.com/J2qxA9UL]13:25
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lambdaywhen I use SNP it works, but for SSK its giving that undefined ref error13:26
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blackburnlambday: strange, I didn't notify anything wrong with that constructor13:34
lambdayblackburn: :(13:36
lambdaydoes it matter which interface it is configured to? since i am not using any interface13:37
blackburnlambday: no13:38
lambdayokay then I am doing a make clean and then make13:40
blackburnyes makes sense sometimes13:40
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lambdayblackburn: didn't help... even strange - I added a method foobar to one of the existing kernels and tried to call it, it shows undefined reference again - but make was successful :-/14:12
lambdaymay be I'm linking it wrong :-/14:13
blackburnwiking: ping14:19
blackburnlambday: no, -lshogun should be enough14:19
lambdaythen may be i am linking it to an older libshogun.so14:22
lambdayI am checking14:22
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lambdayblackburn: yup.. corrected it and now its working.. :)14:27
lambdaythanks a lot, man :)14:27
blackburnlambday: nice14:27
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shogun-notifier-shogun: Evgeniy Andreev :master * c291dc2 / src/shogun/transfer/multitask/MultitaskKernelMaskNormalizer.h: https://github.com/shogun-toolbox/shogun/commit/c291dc27317da6483b31857eff7d9d620981c50816:27
shogun-notifier-shogun: added forgotten include16:27
shogun-notifier-shogun: Evgeniy Andreev :master * b432027 / src/interfaces/python_modular/protocols_helper.i: https://github.com/shogun-toolbox/shogun/commit/b432027d1ed785a947b78ee9832b4d463bffe37616:27
shogun-notifier-shogun: fix: checking python's version for buffer protocol16:27
shogun-notifier-shogun: Sergey Lisitsyn :master * 1f4a951 / src/ (2 files): https://github.com/shogun-toolbox/shogun/commit/1f4a9514dd40081e5161d74f6cb66821643a964816:27
shogun-notifier-shogun: Merge pull request #913 from gsomix/fixes16:27
shogun-notifier-shogun:16:27
shogun-notifier-shogun: Small pack of fixes: buffer protocol and compiling16:27
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blackburnsonney2k: gsomix fixed his stuff17:06
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gsomixhi17:37
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wikingblackburn: pong20:13
blackburnwiking: wanted to ask you about clang static analyzer20:13
wikingblackburn: listening20:14
blackburnwiking: it generates no output for a reason20:14
blackburnwiking: how did you use it?20:14
wikingah well u have output here20:14
wikinghttp://categorizer.tmit.bme.hu/~wiking/shogun.sa/2013-03-09-2/20:14
wikingbut if u wanna use it locally20:14
wikingbasically it's done like this20:14
blackburnwiking: I want output for tapkee :)20:14
blackburnah btw20:15
wikingscan-build ./configure20:15
wikingscan-build make20:15
blackburnwiking: are you running mac now?20:15
wikingye20:15
blackburnwiking: could you please test tapkee?20:15
wikingmmm lemme checkout20:15
blackburnwiking: git clone git://github.com/lisitsyn/tapkee.git && cd tapkee && mkdir build && cmake -Dbuild_tests=1 .. && make && make test20:16
blackburnoops20:16
blackburnwiking: git clone git://github.com/lisitsyn/tapkee.git && cd tapkee && mkdir build && cd build && cmake -Dbuild_tests=1 .. && make && make test20:16
wiking-- Could NOT find OpenMP (missing:  OpenMP_C_FLAGS OpenMP_CXX_FLAGS)20:16
wikingCMake Error at CMakeLists.txt:29 (include_directories): include_directories given empty-string as include directory.20:16
blackburnhere comes full thing for convenience :)20:16
wikingthe problem is clang does not have openmp20:17
blackburnyeah I know20:17
blackburnlet me check20:17
blackburnwiking: is that an error?20:17
wikingyepp20:17
wikingcmake dies with this20:17
blackburnhmmm it is not rquired..20:17
wikingwell it still dies like that20:18
blackburnwiking: it says can't found but continues here20:18
wikingit tries all the different ways to find openmp20:18
blackburn-- Could NOT find OpenMP (missing:  OpenMP_CXX_FLAGS)20:18
blackburn-- Found minimal setup for the Google Mock library:20:18
blackburn-- Configuring done20:18
blackburn-- Generating done20:18
wikingand then it does this20:18
wikingCMake Error at CMakeLists.txt:29 (include_directories): include_directories given empty-string as include directory.20:18
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blackburnwiking: ahh20:19
blackburnwiking: strange it doesn't detect gmock20:19
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blackburnwiking: update please20:20
wikingblackburn: gmock is not in usual path20:20
wikinghow can i define it?20:20
wikingCMake Error at CMakeLists.txt:70 (add_executable):20:21
wiking  Cannot find source file:20:21
wiking    test/simple.cpp20:21
wiking  Tried extensions .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp20:21
wiking  .hxx .in .txx20:21
blackburnwiking: once again20:21
blackburnwiking: about gmock20:21
blackburntry -DGMOCK_SOURCE_ROOT=..20:22
wiking-- Found minimal setup for the Google Mock library: /Users/wiking/gmock-1.6.020:23
wiking-- Configuring done20:23
wikingCMake Error at CMakeLists.txt:70 (add_executable):20:23
wiking  Cannot find source file:20:23
wiking    test/simple.cpp20:23
wiking  Tried extensions .c .C .c++ .cc .cpp .cxx .m .M .mm .h .hh .h++ .hm .hpp20:23
wiking  .hxx .in .txx20:23
blackburnwiking: update ;)20:23
blackburnjust added it20:23
wikingok now it ran fine... building20:25
blackburnwiking: good you pointed it out20:25
wiking100%] Building CXX object CMakeFiles/tapkee_tests.dir/test/simple.cpp.o20:26
wikingLinking CXX executable tapkee_tests20:26
wikingld: library not found for -lgmock20:26
wikingclang: error: linker command failed with exit code 1 (use -v to see invocation)20:26
wikingi think there's a missing -L there20:26
wikingor something20:26
blackburnI do not have much tests but just to check if it is working under mac20:26
blackburnuhm20:26
wikingr u building gtest/gmock statics ?20:26
wikingas u'll have to do that20:27
blackburnwiking: something is wrong with that gmock detection script20:27
blackburnwiking: why? it works here as is20:27
wikingthat gmock i give him is purely the src20:27
wikingthere's no .so neither .a20:27
wikingof gmock20:27
wikingyou should not expect having gmock/gtest shared20:27
wikingas you should build them with the same compiler flags as your thing that u wanna test it with20:28
wikingi.e. see shogun unit testing build20:28
blackburnwiking: so I'd need to build gmock and then build tests with it?20:28
wikingindeed20:29
wikingu need to build gmock and gtest20:29
wikingas static library20:29
wikingand then link it to your testing executable20:29
blackburnwiking: okay I see, requires some magic20:30
wikingotherwise the main file builds20:30
blackburnwiking: okay what about main thing20:31
blackburnwiking: it builds?20:31
wiking[master build] $ ./tapkee                                                                                                                          [wiking@welitron:~/tapkee/build]20:31
wiking[error] No input file specified. Please use -h flag if stucked20:31
wikingyes20:31
blackburnwiking: okay, thanks! I'll try to add something to build gmock20:32
blackburnwiking: not sure how to do that in cmake20:32
wikingithink there's something about this in the documents of gmock/gtest20:32
wikingcheck their wiki20:32
blackburnwiking: nothing20:35
wiking:(20:35
blackburnwiking: I am surprised with a variety of cmake finders20:38
blackburnfor gmock20:38
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shogun-notifier-shogun: Soeren Sonnenburg :master * caa80db / / (7 files): https://github.com/shogun-toolbox/shogun/commit/caa80db4b8e75e0222780c0449a0afc1967bf3ba21:19
shogun-notifier-shogun: blacklist director based examples and require new data version21:19
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@sonney2kblackburn, if you see gsomix tell him thanks for the buffer proto fixes but also tell him that the director stuff does not work... at least when I run generator.py things are randomly crashing :/21:20
blackburnsonney2k: he is around now I guess21:20
@sonney2kgsomix, ahh there you are21:21
@sonney2kdidn't see you :D21:21
blackburnsonney2k: but may be totally drunk21:21
@sonney2kblackburn, I know that he is Russian too21:21
@sonney2kso no news to me21:21
blackburnsonney2k: actually he is a bad russian21:21
blackburnsonney2k: he doesn't drink at all or so21:21
@sonney2kblackburn, drinking beer instead of vodka?21:21
@sonney2kohh even worse21:22
blackburnsonney2k: yeah that's madness, I can't understand that21:22
@sonney2kno idea how you both can share a room21:22
blackburnsonney2k: I usually at work and just get home to sleep (already drunk)21:22
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blackburnsonney2k: I am now 'working' with waffles - what a crazy toolbox21:28
blackburnhaha I have 73 commits today21:28
blackburnah no21:29
blackburn03-0921:29
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gsomixsonney2k: hi21:52
gsomixsonney2k: ohh, shi~. I'll see at directors tomorrow. :(21:56
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--- Log closed Sun Mar 10 00:00:10 2013