Open in new window / Try shogun cloud
--- Log opened Sat Mar 15 00:00:25 2014
--- Day changed Sat Mar 15 2014
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kislaywiking, hey!00:45
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travis-ci[travis-ci] it's Heiko Strathmann's turn to pay the next round of drinks for the massacre he caused in sunil1337/shogun: http://travis-ci.org/sunil1337/shogun/builds/2081356005:03
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dhruv13hello! does anyone know how to deal with CDistance Objects after use? do i free it explicitly? I'm getting memory leaks for some reason...10:06
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dhruv13iglesiasg: hey! where do i put nanoflann.hpp?13:23
dhruv13iglesiasg: for the KDTree implementation13:23
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@iglesiasgdhruv13, let me see13:27
@iglesiasgdhruv13, lib/nanoflann/13:27
dhruv13iglesiasg: okay... and I have implemented an adaptor to shogun CDistance, should that go into nanoflann.h or into lib/nanoflann/SGAdaptor.h?13:28
@iglesiasgdhruv13, the adaptor is for nanoflann I understand, is that right?13:30
dhruv13iglesiasg: yeah13:31
@iglesiasgdhruv13, I think a file called nanoflann_shogun inside lib/nanoflann would make sense for that13:31
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dhruv13iglesiasg: okay!13:32
@iglesiasgdhruv13, you can draw some inspiration from previous integrations to answer these questions, see for instance how it is done with tapkee (in lib/tapkee)13:32
dhruv13iglesiasg: okay :)13:32
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@iglesiasghey PirosB313:41
PirosB3hey iglesiasg13:42
PirosB3hey dhruv1313:42
@iglesiasgPirosB3, what .light data set are you using to get the error you fired an issue for?13:42
PirosB3i'm getting the name13:43
@iglesiasgPirosB3, I mean this one: github.com/shogun-toolbox/shogun/issues/199913:43
dhruv13PirosB3: hey!!13:43
PirosB3toy/7class_example4_train.light13:44
PirosB3just to let you know iglesiasg this issue has not appeared to me any more13:44
PirosB3but still, I should not take the issue out13:44
PirosB3till someone else tries it13:45
PirosB3I have an open pull request https://github.com/shogun-toolbox/shogun/pull/195413:45
@iglesiasgPirosB3, I am going to try and reproduce it13:45
PirosB3oh great! that would be amazing13:45
PirosB3iglesiasg: you have to pull down my branch13:45
PirosB3all instructions are on the PR ;)13:45
@iglesiasgPirosB3, yeah sure, already did that13:45
PirosB3please try to reproduce13:45
PirosB3and update the ticket.13:46
@iglesiasgPirosB3, but I was using a sparse data set I believe so it didn't really work out ;)13:46
PirosB3because iglesiasg I am using virtualized OS, so I just want to make sure it's not my issue13:46
PirosB3I am using SparseRealFeatures13:47
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dhruv13do i have to make changes in cmake files to use it?13:54
dhruv13iglesiasg: do i have to make changes in cmake files to use it?13:54
@iglesiasgdhruv13, to use what?13:54
dhruv13iglesiasg: lib/nanoflann/nanoflann.hpp13:55
@iglesiasgdhruv13, I don't think so. Although I am not sure, just set it up and write a unit test making use of it13:57
dhruv13iglesiasg: okay!13:58
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shogun-notifier-shogun: Daniel Pyrathon :develop * b7158ec / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/b7158eccd2c1f76529b02a148a0f896c03c84c3115:04
shogun-notifier-shogun: initial commit of train_multiclass_svm. Issue #186815:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 97ed25f / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/97ed25f0330e28d59dac43de70993f334b647dd415:04
shogun-notifier-shogun: better indentation and better logging15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * edf652b / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/edf652b1cf60bb06d468a35134b2396162bb01ac15:04
shogun-notifier-shogun: more refactor and decoupling15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * acee41f / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/acee41f1cedc28d0f67051ee20020d9093bc6e2315:04
shogun-notifier-shogun: decoupling CLI from training. train_multiclass can be reused in the future15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 1bf267e / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/1bf267effaf84bcac9d234f0bc4606208f34f08915:04
shogun-notifier-shogun: added new license15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 356d728 / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/356d728b8fe4e06d05b8b53396d3bdda85d629bd15:04
shogun-notifier-shogun: added benchmarking for training15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * d335493 / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/d33549306ceac1039889c7b5dbb8983451ab695215:04
shogun-notifier-shogun: added closing statement15:04
shogun-notifier-shogun: refactor scripts15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 57511c6 / applications/classification/train_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/57511c6ffe2c0c835d6f7cc8520ffdf9ca27b6ba15:04
shogun-notifier-shogun: adding linear kernel option15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 86851c2 / / (7 files): https://github.com/shogun-toolbox/shogun/commit/86851c2817830f9c1a864971531c5cf10742eb6215:04
shogun-notifier-shogun: Merge branch 'develop' of https://github.com/shogun-toolbox/shogun into feature/186815:04
shogun-notifier-shogun: Daniel Pyrathon :develop * f0a94fb / applications/classification/ (2 files): https://github.com/shogun-toolbox/shogun/commit/f0a94fb6c56dee0b6235ab176b063ddc2842b99a15:04
shogun-notifier-shogun: renamed evaluate script15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 9af5447 / applications/classification/ (2 files): https://github.com/shogun-toolbox/shogun/commit/9af54475ee5b27f461017f598f11f19b3a895dc315:04
shogun-notifier-shogun: saving and loading from svmlight (no hdf5)15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 9138832 / applications/classification/ (3 files): https://github.com/shogun-toolbox/shogun/commit/91388321605dab7b12e28ca34acbafce558f4ef415:04
shogun-notifier-shogun: Remove unused dependencies and reformat15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * b613d6d / .gitignore,applications/classification/test_multiclass_svm.py: https://github.com/shogun-toolbox/shogun/commit/b613d6d9521ee12dec39236e30dd0118a1c0b98715:04
shogun-notifier-shogun: reindent again15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 0f715ac / / (11 files): https://github.com/shogun-toolbox/shogun/commit/0f715acfe3aa90f0a78e9d39a4786720158459ce15:04
shogun-notifier-shogun: Merge branch 'develop' of https://github.com/shogun-toolbox/shogun into feature/186815:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 11cd6d8 / .gitignore: https://github.com/shogun-toolbox/shogun/commit/11cd6d8c32e6fa88841df243aab198cc000e425615:04
shogun-notifier-shogun: removed unused ignore folder15:04
shogun-notifier-shogun: Daniel Pyrathon :develop * 8b518ad / applications/classification/evaluate_multiclass_labels.py: https://github.com/shogun-toolbox/shogun/commit/8b518ad8ee3f00a6988de9ac8b82e478287ee69e15:04
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dhruv13iglesiasg: hey! are you free to review my PR?15:16
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thoralfHey GUIs.15:30
PirosB3iglesiasg: great it was merged15:36
PirosB3did you manage to see the memory leaks?15:36
shogun-buildbot_build #535 of FCRH - libshogun is complete: Failure [failed test]  Build details are at http://buildbot.shogun-toolbox.org/builders/FCRH%20-%20libshogun/builds/535  blamelist: Daniel Pyrathon <pirosb3@gmail.com>, tklein23 <tklein23@users.noreply.github.com>15:59
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PirosB3iglesiasg: why is this failing16:15
PirosB3heu thoralf16:15
thoralfHey PirosB316:15
PirosB3unit-IsomapTest16:16
thoralfPirosB3: It's unlikely that we did it.16:17
@iglesiasgI think so too16:17
PirosB3[----------] Global test environment tear-down16:18
PirosB3[==========] 5520 tests from 150 test cases ran. (39822 ms total)16:18
PirosB3[  PASSED  ] 5520 tests.16:18
PirosB3I just ran latest develop, all looking good16:18
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@wikingshogun-buildbot_: force build --branch=develop 'FCRH - libshogun'16:24
shogun-buildbot_build forced [ETA 23m11s]16:24
shogun-buildbot_I'll give a shout when the build finishes16:24
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sunil1337lisitsyn: can you please guide me in https://github.com/shogun-toolbox/shogun/issues/197316:27
shogun-buildbot_build #536 of FCRH - libshogun is complete: Success [build successful]  Build details are at http://buildbot.shogun-toolbox.org/builders/FCRH%20-%20libshogun/builds/53616:28
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sunil1337lisitsyn: i meant in designing the interface and the batch processing...16:30
pfm_does shogun have CRF capabilities?16:32
@wikingpfm_: well in a way yes16:33
@wikingpfm_: check out factor graphs16:34
pfm_the notebook on factor graphs is not very clear on how one might include the conditional aspect in the model16:38
@wikingpfm_: afaik the edges of the graph are probabilities16:40
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pfm_edges are usually potentials, which become probabilities (sort of) upon normalistion16:53
pfm_i haven't implemented a CRF though, so perhaps this factor graph framework is general enough to do it16:54
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grecocdHi. I'm a student who is applying for the GSoC and I'm trying to find an issue I can resolve so I can put in my application. Is there anything in specific that I could work on or do I just keep triaging and pick something myself?18:18
lisitsyngrecocd: hey, feel free to do anything you want18:23
lisitsynany kind of contribution is good for that18:23
grecocdalright, will do! thanks lisitsyn18:24
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shogun-buildbot_build #222 of debian wheezy - memcheck is complete: Failure [failed memory check]  Build details are at http://buildbot.shogun-toolbox.org/builders/debian%20wheezy%20-%20memcheck/builds/222  blamelist: Daniel Pyrathon <pirosb3@gmail.com>, tklein23 <tklein23@users.noreply.github.com>19:58
PirosB3yep, it's always my fault19:58
lisitsynwhat's up20:03
lisitsynPirosB3: I see some 'merge branch ...' commits20:04
lisitsynto avoid that do 'git pull --rebase ...'20:04
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lisitsynso I mean rebase instead of merging20:04
PirosB3ok fine, sorry about that20:05
lisitsynno worries20:05
lisitsynit should have been addressed in some of your PRs so we know who to blame ;)20:05
PirosB3lisitsyn: do you suggest me to write my proposal this weekend, so I can post it on the ML?20:05
lisitsynPirosB3: hmm well it is up to you20:06
PirosB3ahah ok20:06
lisitsynPirosB3: just be sure to make it before deadline20:06
PirosB3sure20:07
lisitsynotherwise should be ok anytime :)20:07
PirosB3great20:07
@sonney2kPirosB3, the earlier the better if you want feedback - and note you can submit your proposal already now and update it any time20:07
PirosB3oh really? I didn't know that20:07
PirosB3ok cool20:07
PirosB3thx20:08
lisitsynah sorry yeah this makes sense if you need any feedback20:09
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fs_is it intentional that without eigen3 shogun doesn't compile anymore? at least on my OS X. shogun 3.2.0 compiled fine without it. I just installed eigen3 which resolved the compilation error for a current git clone.20:32
fs_can be traced back to a recent change in LogDetEstimator.cpp20:32
fs_just curious20:33
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sunil1337fs: can you give the exact error?20:56
sunil1337fs: when compiling w/o eigen320:57
sunil1337fs_: that would be the case when you have colpack installed but not eigen321:03
@sonney2kfs_, not intentional!21:04
@sonney2kbut we need the error to fix it.21:04
fs_don't have the exact message anymore, but the first error was in mathematics/linalg/ratapprox/LogDestEstimator.cpp line 52: CLanczosEigenSolver* eig_solver=new CLanczosEigenSolver(op);21:06
fs_unknown type name21:06
fs_same for class CCGMShiftedFamilySolver21:07
sunil1337fs_: okay..... will fix.21:07
fs_https://github.com/shogun-toolbox/shogun/commit/d6df009ca735ccfd4cd5cbf51e2f9c6885c622c521:08
fs_that probably broke it21:08
sunil1337fs_: not that the lastest one...putting a #ifdef will fix it.. but the enitre constructor won't be available...21:10
sunil1337fs_: thanks for pointing out...21:11
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fs_sure21:27
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dhruv13Good night!!22:34
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PirosB3hey guys, I can't find the link to the shogun GSoC template. Does anyone know where it is?23:06
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PirosB3the google melange gives me a 40423:12
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--- Log closed Sun Mar 16 00:00:40 2014